mahdahar
87ff4c8d85
- Implement AuthController with login/logout functionality - Create UsersModel with bcrypt password hashing - Add AuthFilter to protect all application routes - Create login page with error handling - Add users database migration with email/username fields - Rename ResultComments to TestComments for consistency - Update all routes to require authentication filter - Enhance EntryApiController with comment deletion and better error handling - Update seeder to include demo users and improved test data - Fix BaseController to handle auth sessions properly - Update entry views (daily/monthly) with new API endpoints - Update layout with logout button and user info display - Refactor control test index view for better organization
234 lines
12 KiB
PHP
234 lines
12 KiB
PHP
<?php
|
|
|
|
namespace App\Database\Seeds;
|
|
|
|
use CodeIgniter\Database\Seeder;
|
|
|
|
class CmodQcSeeder extends Seeder
|
|
{
|
|
public function run()
|
|
{
|
|
$this->seedDepts();
|
|
$this->seedControls();
|
|
$this->seedTests();
|
|
$this->seedControlTests();
|
|
$this->seedResults();
|
|
$this->seedTestComments();
|
|
}
|
|
|
|
protected function seedDepts()
|
|
{
|
|
$depts = [
|
|
['dept_name' => 'Chemistry'],
|
|
['dept_name' => 'Hematology'],
|
|
['dept_name' => 'Immunology'],
|
|
['dept_name' => 'Urinalysis'],
|
|
];
|
|
$this->db->table('master_depts')->insertBatch($depts);
|
|
}
|
|
|
|
protected function seedControls()
|
|
{
|
|
$controls = [
|
|
['dept_id' => 1, 'control_name' => 'QC Normal Chemistry', 'lot' => 'QC2024001', 'producer' => 'BioRad', 'exp_date' => '2025-12-31'],
|
|
['dept_id' => 1, 'control_name' => 'QC High Chemistry', 'lot' => 'QC2024002', 'producer' => 'BioRad', 'exp_date' => '2025-12-31'],
|
|
['dept_id' => 2, 'control_name' => 'QC Normal Hema', 'lot' => 'QC2024003', 'producer' => 'Streck', 'exp_date' => '2025-11-30'],
|
|
['dept_id' => 2, 'control_name' => 'QC Low Hema', 'lot' => 'QC2024004', 'producer' => 'Streck', 'exp_date' => '2025-11-30'],
|
|
['dept_id' => 3, 'control_name' => 'QC Normal Immuno', 'lot' => 'QC2024005', 'producer' => 'Roche', 'exp_date' => '2025-10-31'],
|
|
['dept_id' => 4, 'control_name' => 'QC Normal Urine', 'lot' => 'QC2024006', 'producer' => 'Siemens', 'exp_date' => '2025-09-30'],
|
|
// January 2026 controls
|
|
['dept_id' => 1, 'control_name' => 'Trulab N', 'lot' => 'TN2026001', 'producer' => 'Trinity', 'exp_date' => '2026-12-31'],
|
|
['dept_id' => 1, 'control_name' => 'Trulab P', 'lot' => 'TP2026001', 'producer' => 'Trinity', 'exp_date' => '2026-12-31'],
|
|
['dept_id' => 1, 'control_name' => 'Cholestest', 'lot' => 'CT2026001', 'producer' => 'Roche', 'exp_date' => '2026-12-31'],
|
|
// February 2026 controls (new lots)
|
|
['dept_id' => 2, 'control_name' => 'QC Normal Hema', 'lot' => 'H202602', 'producer' => 'Streck', 'exp_date' => '2026-12-31'],
|
|
['dept_id' => 2, 'control_name' => 'QC Low Hema', 'lot' => 'HL202602', 'producer' => 'Streck', 'exp_date' => '2026-12-31'],
|
|
['dept_id' => 1, 'control_name' => 'Trulab N', 'lot' => 'TN202602', 'producer' => 'Trinity', 'exp_date' => '2026-12-31'],
|
|
];
|
|
$this->db->table('master_controls')->insertBatch($controls);
|
|
}
|
|
|
|
protected function seedTests()
|
|
{
|
|
$tests = [
|
|
['dept_id' => 1, 'test_code' => 'GLU', 'test_name' => 'Glucose', 'test_unit' => 'mg/dL', 'test_method' => 'GOD-PAP', 'cva' => 5, 'ba' => 3, 'tea' => 10],
|
|
['dept_id' => 1, 'test_code' => 'CRE', 'test_name' => 'Creatinine', 'test_unit' => 'mg/dL', 'test_method' => 'Jaffe', 'cva' => 4, 'ba' => 2, 'tea' => 8],
|
|
['dept_id' => 1, 'test_code' => 'BUN', 'test_name' => 'Urea Nitrogen', 'test_unit' => 'mg/dL', 'test_method' => 'UREASE', 'cva' => 5, 'ba' => 3, 'tea' => 12],
|
|
['dept_id' => 1, 'test_code' => 'CHOL', 'test_name' => 'Cholesterol', 'test_unit' => 'mg/dL', 'test_method' => 'CHOD-PAP', 'cva' => 6, 'ba' => 4, 'tea' => 15],
|
|
['dept_id' => 2, 'test_code' => 'WBC', 'test_name' => 'WBC', 'test_unit' => 'x10^3/uL', 'test_method' => 'Impedance', 'cva' => 8, 'ba' => 5, 'tea' => 20],
|
|
['dept_id' => 2, 'test_code' => 'RBC', 'test_name' => 'RBC', 'test_unit' => 'x10^6/uL', 'test_method' => 'Impedance', 'cva' => 3, 'ba' => 2, 'tea' => 8],
|
|
['dept_id' => 2, 'test_code' => 'HGB', 'test_name' => 'Hemoglobin', 'test_unit' => 'g/dL', 'test_method' => 'Cyanmethemoglobin', 'cva' => 2, 'ba' => 1, 'tea' => 5],
|
|
['dept_id' => 3, 'test_code' => 'TSH', 'test_name' => 'TSH', 'test_unit' => 'mIU/L', 'test_method' => 'ECLIA', 'cva' => 10, 'ba' => 6, 'tea' => 25],
|
|
['dept_id' => 3, 'test_code' => 'FT4', 'test_name' => 'Free T4', 'test_unit' => 'ng/dL', 'test_method' => 'ECLIA', 'cva' => 8, 'ba' => 5, 'tea' => 20],
|
|
['dept_id' => 4, 'test_code' => 'UP', 'test_name' => 'Urine Protein', 'test_unit' => 'mg/dL', 'test_method' => 'Dipstick', 'cva' => 10, 'ba' => 8, 'tea' => 30],
|
|
];
|
|
$this->db->table('master_tests')->insertBatch($tests);
|
|
}
|
|
|
|
protected function seedControlTests()
|
|
{
|
|
$controlTests = [
|
|
['control_id' => 1, 'test_id' => 1, 'mean' => 95, 'sd' => 5],
|
|
['control_id' => 1, 'test_id' => 2, 'mean' => 1.0, 'sd' => 0.05],
|
|
['control_id' => 1, 'test_id' => 3, 'mean' => 15, 'sd' => 1.2],
|
|
['control_id' => 2, 'test_id' => 1, 'mean' => 180, 'sd' => 12],
|
|
['control_id' => 2, 'test_id' => 2, 'mean' => 2.5, 'sd' => 0.15],
|
|
['control_id' => 2, 'test_id' => 4, 'mean' => 200, 'sd' => 15],
|
|
['control_id' => 3, 'test_id' => 5, 'mean' => 7.5, 'sd' => 0.6],
|
|
['control_id' => 3, 'test_id' => 6, 'mean' => 4.8, 'sd' => 0.2],
|
|
['control_id' => 3, 'test_id' => 7, 'mean' => 14.5, 'sd' => 0.5],
|
|
['control_id' => 4, 'test_id' => 5, 'mean' => 3.5, 'sd' => 0.3],
|
|
['control_id' => 4, 'test_id' => 6, 'mean' => 2.5, 'sd' => 0.15],
|
|
['control_id' => 5, 'test_id' => 8, 'mean' => 2.5, 'sd' => 0.3],
|
|
['control_id' => 5, 'test_id' => 9, 'mean' => 1.2, 'sd' => 0.1],
|
|
['control_id' => 6, 'test_id' => 10, 'mean' => 10, 'sd' => 1.5],
|
|
['control_id' => 1, 'test_id' => 4, 'mean' => 150, 'sd' => 10],
|
|
// New control-tests for January 2026
|
|
['control_id' => 7, 'test_id' => 1, 'mean' => 90, 'sd' => 4], // Trulab N - Glucose
|
|
['control_id' => 7, 'test_id' => 2, 'mean' => 0.9, 'sd' => 0.04], // Trulab N - Creatinine
|
|
['control_id' => 7, 'test_id' => 4, 'mean' => 145, 'sd' => 8], // Trulab N - Cholesterol
|
|
['control_id' => 8, 'test_id' => 1, 'mean' => 175, 'sd' => 10], // Trulab P - Glucose
|
|
['control_id' => 8, 'test_id' => 2, 'mean' => 2.4, 'sd' => 0.12], // Trulab P - Creatinine
|
|
['control_id' => 8, 'test_id' => 4, 'mean' => 195, 'sd' => 12], // Trulab P - Cholesterol
|
|
['control_id' => 9, 'test_id' => 4, 'mean' => 180, 'sd' => 10], // Cholestest - Cholesterol
|
|
// February 2026 control-tests
|
|
['control_id' => 10, 'test_id' => 5, 'mean' => 7.6, 'sd' => 0.5], // QC Normal Hema (Feb) - WBC
|
|
['control_id' => 10, 'test_id' => 6, 'mean' => 4.7, 'sd' => 0.2], // QC Normal Hema (Feb) - RBC
|
|
['control_id' => 10, 'test_id' => 7, 'mean' => 14.8, 'sd' => 0.4], // QC Normal Hema (Feb) - HGB
|
|
['control_id' => 11, 'test_id' => 5, 'mean' => 3.4, 'sd' => 0.25], // QC Low Hema (Feb) - WBC
|
|
['control_id' => 11, 'test_id' => 6, 'mean' => 2.4, 'sd' => 0.14], // QC Low Hema (Feb) - RBC
|
|
['control_id' => 12, 'test_id' => 1, 'mean' => 92, 'sd' => 4.2], // Trulab N (Feb) - Glucose
|
|
['control_id' => 12, 'test_id' => 2, 'mean' => 0.95, 'sd' => 0.05], // Trulab N (Feb) - Creatinine
|
|
['control_id' => 12, 'test_id' => 4, 'mean' => 148, 'sd' => 9], // Trulab N (Feb) - Cholesterol
|
|
];
|
|
$this->db->table('control_tests')->insertBatch($controlTests);
|
|
}
|
|
|
|
protected function seedResults()
|
|
{
|
|
$faker = \Faker\Factory::create();
|
|
$results = [];
|
|
|
|
$controlTests = $this->db->table('control_tests')->get()->getResultArray();
|
|
$resultCount = 0;
|
|
$maxResults = 150; // Increased for more test data
|
|
|
|
// January 2026 results (days 1-31)
|
|
foreach ($controlTests as $ct) {
|
|
$numResults = $faker->numberBetween(3, 5);
|
|
|
|
for ($i = 0; $i < $numResults && $resultCount < $maxResults; $i++) {
|
|
$day = $faker->numberBetween(1, 31);
|
|
$resDate = "2026-01-" . str_pad($day, 2, '0', STR_PAD_LEFT);
|
|
$value = $ct['mean'] + ($faker->randomFloat(2, -2.5, 2.5) * $ct['sd']);
|
|
|
|
$results[] = [
|
|
'control_id' => $ct['control_id'],
|
|
'test_id' => $ct['test_id'],
|
|
'res_date' => $resDate,
|
|
'res_value' => round($value, 2),
|
|
'created_at' => date('Y-m-d H:i:s'),
|
|
'updated_at' => date('Y-m-d H:i:s'),
|
|
];
|
|
$resultCount++;
|
|
}
|
|
}
|
|
|
|
// February 2026 results (days 1-28)
|
|
foreach ($controlTests as $ct) {
|
|
$numResults = $faker->numberBetween(3, 5);
|
|
|
|
for ($i = 0; $i < $numResults && $resultCount < $maxResults; $i++) {
|
|
$day = $faker->numberBetween(1, 28);
|
|
$resDate = "2026-02-" . str_pad($day, 2, '0', STR_PAD_LEFT);
|
|
$value = $ct['mean'] + ($faker->randomFloat(2, -2.5, 2.5) * $ct['sd']);
|
|
|
|
$results[] = [
|
|
'control_id' => $ct['control_id'],
|
|
'test_id' => $ct['test_id'],
|
|
'res_date' => $resDate,
|
|
'res_value' => round($value, 2),
|
|
'created_at' => date('Y-m-d H:i:s'),
|
|
'updated_at' => date('Y-m-d H:i:s'),
|
|
];
|
|
$resultCount++;
|
|
}
|
|
}
|
|
|
|
$this->db->table('results')->insertBatch($results);
|
|
}
|
|
|
|
protected function seedTestComments()
|
|
{
|
|
$faker = \Faker\Factory::create();
|
|
$comments = [];
|
|
|
|
// Get all tests
|
|
$tests = $this->db->table('master_tests')->get()->getResultArray();
|
|
|
|
// Comment templates for different test types
|
|
$commentTemplates = [
|
|
'QC stable throughout the period',
|
|
'Slight drift observed, monitoring continued',
|
|
'Calibration verified, values within range',
|
|
'Reagent lot changed, new QC run initiated',
|
|
'Instrument maintenance performed',
|
|
'Shift detected, corrective action taken',
|
|
'Control values consistent with previous lot',
|
|
'Temperature check completed, within specs',
|
|
'New lot validated successfully',
|
|
'Periodic check satisfactory',
|
|
];
|
|
|
|
// Generate comments for Jan 2026 (days 1-31)
|
|
foreach ($tests as $test) {
|
|
$numComments = $faker->numberBetween(3, 6);
|
|
$usedDates = [];
|
|
|
|
for ($i = 0; $i < $numComments; $i++) {
|
|
// Pick a random date in January
|
|
do {
|
|
$day = $faker->numberBetween(1, 31);
|
|
$dateKey = "2026-01-" . str_pad($day, 2, '0', STR_PAD_LEFT);
|
|
} while (in_array($dateKey, $usedDates));
|
|
|
|
$usedDates[] = $dateKey;
|
|
|
|
$comments[] = [
|
|
'test_id' => $test['test_id'],
|
|
'comment_date' => $dateKey,
|
|
'comment_text' => $faker->randomElement($commentTemplates),
|
|
'created_at' => date('Y-m-d H:i:s'),
|
|
'updated_at' => date('Y-m-d H:i:s'),
|
|
];
|
|
}
|
|
}
|
|
|
|
// Generate comments for Feb 2026 (days 1-28)
|
|
foreach ($tests as $test) {
|
|
$numComments = $faker->numberBetween(2, 5);
|
|
$usedDates = [];
|
|
|
|
for ($i = 0; $i < $numComments; $i++) {
|
|
// Pick a random date in February
|
|
do {
|
|
$day = $faker->numberBetween(1, 28);
|
|
$dateKey = "2026-02-" . str_pad($day, 2, '0', STR_PAD_LEFT);
|
|
} while (in_array($dateKey, $usedDates));
|
|
|
|
$usedDates[] = $dateKey;
|
|
|
|
$comments[] = [
|
|
'test_id' => $test['test_id'],
|
|
'comment_date' => $dateKey,
|
|
'comment_text' => $faker->randomElement($commentTemplates) . ' (Feb)',
|
|
'created_at' => date('Y-m-d H:i:s'),
|
|
'updated_at' => date('Y-m-d H:i:s'),
|
|
];
|
|
}
|
|
}
|
|
|
|
$this->db->table('test_comments')->insertBatch($comments);
|
|
}
|
|
}
|