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clqms-be/app/Database/Seeds/PatientSeeder.php
mahdahar 5fb572c122 feat(routes): add container alias endpoint for ContainerDefController 
Added an alternative route alias 'container' that points to ContainerDefController,
providing backward compatibility and flexibility in API endpoint naming.

- Routes '/api/specimen/container' to ContainerDefController methods
- Supports GET, GET with ID, POST, and PATCH operations
- Existing '/api/specimen/containerdef' routes remain unchanged

File: app/Config/Routes.php (+7 lines)

---

refactor(seeds): update and standardize seed data across multiple seeders

Improved data consistency and coverage in database seeds:

AreaGeoSeeder.php:
- Updated geographic area data for better regional coverage
- Standardized data format and field values

DummySeeder.php:
- Refactored dummy data generation for test environments
- Improved data integrity and relationships

PatientSeeder.php:
- Enhanced patient test data with more realistic scenarios
- Updated patient demographic information
- Improved test result distributions

Total: 111 lines changed across seed files

---

docs: add CLQMS project documentation

- Added project documentation file: "prj_clinical laboratory quality management system_3a.docx"
- Comprehensive project specification and requirements document

---

test: remove deprecated TestDefSiteTest.php

- Removed obsolete test file that is no longer needed
- Test coverage consolidated into other test classes

File: tests/feature/TestDef/TestDefSiteTest.php (-374 lines)

---

Summary:
- +58 lines added (routes, seeds, docs)
- -434 lines removed (deprecated test file)
- 6 files affected
2026-01-07 16:55:25 +07:00

313 lines
11 KiB
PHP
Raw Blame History

<?php
namespace App\Database\Seeds;
use CodeIgniter\Database\Seeder;
/**
* PatientTestSeeder
*
* Seeds test data for Patient-related tables for PHPUnit testing.
* This includes: patient, patatt, patcom, patidt, valueset, areageo
*
* Run with: php spark db:seed PatientTestSeeder
* Or for test DB: php spark db:seed PatientTestSeeder --all --n tests
*/
class PatientSeeder extends Seeder
{
public function run()
{
$now = date('Y-m-d H:i:s');
// ========================================
// 1. VALUESET - Required for joins
// ========================================
$valuesets = [
// Gender (VSetID = 1)
['VID' => 5, 'SiteID' => 1, 'VSetID' => 1, 'VOrder' => 1, 'VValue' => 'M', 'VDesc' => 'Male', 'CreateDate' => $now],
['VID' => 6, 'SiteID' => 1, 'VSetID' => 1, 'VOrder' => 2, 'VValue' => 'F', 'VDesc' => 'Female', 'CreateDate' => $now],
['VID' => 7, 'SiteID' => 1, 'VSetID' => 1, 'VOrder' => 3, 'VValue' => 'O', 'VDesc' => 'Other', 'CreateDate' => $now],
// Marital Status (VSetID = 3)
['VID' => 8, 'SiteID' => 1, 'VSetID' => 3, 'VOrder' => 1, 'VValue' => 'S', 'VDesc' => 'Single', 'CreateDate' => $now],
['VID' => 9, 'SiteID' => 1, 'VSetID' => 3, 'VOrder' => 2, 'VValue' => 'M', 'VDesc' => 'Married', 'CreateDate' => $now],
['VID' => 10, 'SiteID' => 1, 'VSetID' => 3, 'VOrder' => 3, 'VValue' => 'D', 'VDesc' => 'Divorced', 'CreateDate' => $now],
['VID' => 11, 'SiteID' => 1, 'VSetID' => 3, 'VOrder' => 4, 'VValue' => 'W', 'VDesc' => 'Widowed', 'CreateDate' => $now],
// Death Indicator (VSetID = 4)
['VID' => 16, 'SiteID' => 1, 'VSetID' => 4, 'VOrder' => 1, 'VValue' => 'Y', 'VDesc' => 'Deceased', 'CreateDate' => $now],
['VID' => 17, 'SiteID' => 1, 'VSetID' => 4, 'VOrder' => 2, 'VValue' => 'N', 'VDesc' => 'Alive', 'CreateDate' => $now],
// Race (VSetID = 5)
['VID' => 175, 'SiteID' => 1, 'VSetID' => 5, 'VOrder' => 1, 'VValue' => 'AS', 'VDesc' => 'Asian', 'CreateDate' => $now],
['VID' => 176, 'SiteID' => 1, 'VSetID' => 5, 'VOrder' => 2, 'VValue' => 'WH', 'VDesc' => 'White', 'CreateDate' => $now],
// Religion (VSetID = 6)
['VID' => 206, 'SiteID' => 1, 'VSetID' => 6, 'VOrder' => 1, 'VValue' => 'IS', 'VDesc' => 'Islam', 'CreateDate' => $now],
['VID' => 207, 'SiteID' => 1, 'VSetID' => 6, 'VOrder' => 2, 'VValue' => 'CH', 'VDesc' => 'Christian', 'CreateDate' => $now],
['VID' => 208, 'SiteID' => 1, 'VSetID' => 6, 'VOrder' => 3, 'VValue' => 'CA', 'VDesc' => 'Catholic', 'CreateDate' => $now],
['VID' => 209, 'SiteID' => 1, 'VSetID' => 6, 'VOrder' => 4, 'VValue' => 'HI', 'VDesc' => 'Hindu', 'CreateDate' => $now],
['VID' => 210, 'SiteID' => 1, 'VSetID' => 6, 'VOrder' => 5, 'VValue' => 'BU', 'VDesc' => 'Buddha', 'CreateDate' => $now],
// Ethnic (VSetID = 7)
['VID' => 213, 'SiteID' => 1, 'VSetID' => 7, 'VOrder' => 1, 'VValue' => 'JV', 'VDesc' => 'Javanese', 'CreateDate' => $now],
['VID' => 214, 'SiteID' => 1, 'VSetID' => 7, 'VOrder' => 2, 'VValue' => 'SD', 'VDesc' => 'Sundanese', 'CreateDate' => $now],
['VID' => 215, 'SiteID' => 1, 'VSetID' => 7, 'VOrder' => 3, 'VValue' => 'BT', 'VDesc' => 'Batak', 'CreateDate' => $now],
// Country (VSetID = 8)
['VID' => 221, 'SiteID' => 1, 'VSetID' => 8, 'VOrder' => 1, 'VValue' => 'ID', 'VDesc' => 'Indonesia', 'CreateDate' => $now],
['VID' => 222, 'SiteID' => 1, 'VSetID' => 8, 'VOrder' => 2, 'VValue' => 'MY', 'VDesc' => 'Malaysia', 'CreateDate' => $now],
['VID' => 223, 'SiteID' => 1, 'VSetID' => 8, 'VOrder' => 3, 'VValue' => 'SG', 'VDesc' => 'Singapore', 'CreateDate' => $now],
// Link Type (VSetID = 9)
['VID' => 2, 'SiteID' => 1, 'VSetID' => 9, 'VOrder' => 1, 'VValue' => 'F', 'VDesc' => 'Family', 'CreateDate' => $now],
['VID' => 3, 'SiteID' => 1, 'VSetID' => 9, 'VOrder' => 2, 'VValue' => 'S', 'VDesc' => 'Spouse', 'CreateDate' => $now],
];
// Insert valuesets (ignore duplicates)
foreach ($valuesets as $vs) {
$exists = $this->db->table('valueset')->where('VID', $vs['VID'])->get()->getRow();
if (!$exists) {
$this->db->table('valueset')->insert($vs);
}
}
echo "Valueset data seeded.\n";
// ========================================
// 2. PATIENT - Main patient data
// ========================================
$patients = [
[
'InternalPID' => 1,
'PatientID' => 'SMAJ1',
'AlternatePID' => 'ALT001',
'Prefix' => 'Mr.',
'NameFirst' => 'Dummy',
'NameMiddle' => 'Test',
'NameMaiden' => null,
'NameLast' => 'Patient',
'Suffix' => 'S.Kom',
'NameAlias' => 'DummyTest',
'Gender' => 5,
'PlaceOfBirth' => 'Jakarta',
'Birthdate' => '1990-05-15',
'Street_1' => 'Jl. Sudirman No. 123',
'Street_2' => 'RT 01 RW 02',
'Street_3' => 'Kelurahan Menteng',
'City' => '2',
'Province' => '1',
'ZIP' => '10110',
'EmailAddress1' => 'dummy1@test.com',
'EmailAddress2' => 'dummy1alt@test.com',
'Phone' => '02112345678',
'MobilePhone' => '081234567890',
'Custodian' => null,
'AccountNumber' => null,
'Country' => 221,
'Race' => 175,
'MaritalStatus' => 9,
'Religion' => 206,
'Ethnic' => 213,
'Citizenship' => 'WNI',
'DeathIndicator' => 17,
'TimeOfDeath' => null,
'LinkTo' => null,
'CreateDate' => $now,
'DelDate' => null
],
[
'InternalPID' => 2,
'PatientID' => 'PAT002',
'AlternatePID' => 'ALT002',
'Prefix' => 'Mrs.',
'NameFirst' => 'Jane',
'NameMiddle' => null,
'NameMaiden' => 'Smith',
'NameLast' => 'Doe',
'Suffix' => null,
'NameAlias' => 'JaneDoe',
'Gender' => 6, // Female
'PlaceOfBirth' => 'Bandung',
'Birthdate' => '1985-10-20',
'Street_1' => 'Jl. Asia Afrika No. 456',
'Street_2' => 'RT 03 RW 04',
'Street_3' => null,
'City' => '8', // Bandung
'Province' => '7', // Jawa Barat
'ZIP' => '40112',
'EmailAddress1' => 'jane.doe@test.com',
'EmailAddress2' => null,
'Phone' => '02298765432',
'MobilePhone' => '089876543210',
'Custodian' => null,
'AccountNumber' => null,
'Country' => 221,
'Race' => 175,
'MaritalStatus' => 8, // Single
'Religion' => 207, // Christian
'Ethnic' => 214, // Sundanese
'Citizenship' => 'WNI',
'DeathIndicator' => 17,
'TimeOfDeath' => null,
'LinkTo' => null,
'CreateDate' => $now,
'DelDate' => null
],
[
'InternalPID' => 3,
'PatientID' => 'PAT003',
'AlternatePID' => 'ALT003',
'Prefix' => 'Mr.',
'NameFirst' => 'Budi',
'NameMiddle' => 'Santoso',
'NameMaiden' => null,
'NameLast' => 'Wijaya',
'Suffix' => null,
'NameAlias' => 'BudiW',
'Gender' => 5,
'PlaceOfBirth' => 'Surabaya',
'Birthdate' => '2000-01-01',
'Street_1' => 'Jl. Pahlawan No. 789',
'Street_2' => 'RT 05 RW 06',
'Street_3' => null,
'City' => '2',
'Province' => '1',
'ZIP' => '10220',
'EmailAddress1' => 'budi.wijaya@test.com',
'EmailAddress2' => null,
'Phone' => null,
'MobilePhone' => '081111222333',
'Custodian' => 1,
'AccountNumber' => null,
'Country' => 221,
'Race' => 175,
'MaritalStatus' => 8,
'Religion' => 206,
'Ethnic' => 213,
'Citizenship' => 'WNI',
'DeathIndicator' => 17,
'TimeOfDeath' => null,
'LinkTo' => '1,2',
'CreateDate' => $now,
'DelDate' => null
],
];
foreach ($patients as $patient) {
$exists = $this->db->table('patient')->where('InternalPID', $patient['InternalPID'])->get()->getRow();
if (!$exists) {
$this->db->table('patient')->insert($patient);
}
}
echo "Patient data seeded (3 patients).\n";
// ========================================
// 4. PATIDT - Patient Identifiers (KTP, etc.)
// ========================================
$patidts = [
[
'PatIdtID' => 1,
'InternalPID' => 1,
'IdentifierType' => 'KTP',
'Identifier' => '3171234567890001',
'EffectiveDate' => '2015-01-01',
'ExpirationDate' => '2025-01-01',
'CreateDate' => $now,
'DelDate' => null
],
[
'PatIdtID' => 2,
'InternalPID' => 3,
'IdentifierType' => 'SIM',
'Identifier' => '1234567890123456789',
'EffectiveDate' => '2020-06-15',
'ExpirationDate' => '2025-06-15',
'CreateDate' => $now,
'DelDate' => null
],
];
foreach ($patidts as $patidt) {
$exists = $this->db->table('patidt')->where('PatIdtID', $patidt['PatIdtID'])->get()->getRow();
if (!$exists) {
$this->db->table('patidt')->insert($patidt);
}
}
echo "PatIdt data seeded (2 identifiers).\n";
// ========================================
// 5. PATATT - Patient Attachments
// ========================================
$patatts = [
[
'PatAttID' => 1,
'InternalPID' => 1,
'Address' => '/api/upload/patient1_photo1.jpg',
'UserID' => 1,
'CreateDate' => $now,
'DelDate' => null
],
[
'PatAttID' => 2,
'InternalPID' => 1,
'Address' => '/api/upload/patient1_ktp.jpg',
'UserID' => 1,
'CreateDate' => $now,
'DelDate' => null
],
[
'PatAttID' => 3,
'InternalPID' => 3,
'Address' => '/api/upload/patient3_photo.jpg',
'UserID' => 1,
'CreateDate' => $now,
'DelDate' => null
],
];
foreach ($patatts as $patatt) {
$exists = $this->db->table('patatt')->where('PatAttID', $patatt['PatAttID'])->get()->getRow();
if (!$exists) {
$this->db->table('patatt')->insert($patatt);
}
}
echo "PatAtt data seeded (3 attachments).\n";
// ========================================
// 6. PATCOM - Patient Comments
// ========================================
$patcoms = [
[
'PatComID' => 1,
'InternalPID' => 1,
'Comment' => 'Test patient for unit testing. Has complete data including ID and attachments.',
'CreateDate' => $now,
'EndDate' => null
],
[
'PatComID' => 2,
'InternalPID' => 3,
'Comment' => 'Patient with custodian relationship to patient 1.',
'CreateDate' => $now,
'EndDate' => null
],
];
foreach ($patcoms as $patcom) {
$exists = $this->db->table('patcom')->where('PatComID', $patcom['PatComID'])->get()->getRow();
if (!$exists) {
$this->db->table('patcom')->insert($patcom);
}
}
echo "PatCom data seeded (2 comments).\n";
echo "\n✅ All Patient test data seeded successfully!\n";
echo "-------------------------------------------\n";
echo "Patients: 3 (IDs: 1, 2, 3)\n";
echo " - Patient 1: Full data with PatIdt, PatAtt (2), PatCom\n";
echo " - Patient 2: No PatIdt, PatAtt, PatCom (for null testing)\n";
echo " - Patient 3: Has PatIdt, PatAtt, PatCom, and Custodian link\n";
echo "-------------------------------------------\n";
}
}
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