fix: preserve numeric ref range metadata
This commit is contained in:
parent
a73b88bc05
commit
366572a0cb
@ -59,27 +59,29 @@ class RefNumModel extends BaseModel
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$rows = $this->getActiveByTestSiteID($testSiteID);
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return array_map(function ($r) {
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return [
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'RefNumID' => $r['RefNumID'],
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'NumRefType' => $r['NumRefType'],
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'NumRefTypeLabel' => $r['NumRefType'] ? \App\Libraries\ValueSet::getLabel('numeric_ref_type', $r['NumRefType']) : '',
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'RangeType' => $r['RangeType'],
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'RangeTypeLabel' => $r['RangeType'] ? \App\Libraries\ValueSet::getLabel('range_type', $r['RangeType']) : '',
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'Sex' => $r['Sex'],
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'SexLabel' => $r['Sex'] ? \App\Libraries\ValueSet::getLabel('gender', $r['Sex']) : '',
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'LowSign' => $r['LowSign'],
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'LowSignLabel' => $r['LowSign'] ? \App\Libraries\ValueSet::getLabel('math_sign', $r['LowSign']) : '',
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'HighSign' => $r['HighSign'],
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'HighSignLabel' => $r['HighSign'] ? \App\Libraries\ValueSet::getLabel('math_sign', $r['HighSign']) : '',
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'High' => $r['High'] !== null ? (float) $r['High'] : null,
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'Low' => $r['Low'] !== null ? (float) $r['Low'] : null,
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'AgeStart' => (int) $r['AgeStart'],
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'AgeEnd' => (int) $r['AgeEnd'],
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'Flag' => $r['Flag'],
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'Interpretation' => $r['Interpretation'],
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];
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}, $rows ?? []);
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}
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return [
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'RefNumID' => $r['RefNumID'],
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'NumRefType' => $r['NumRefType'],
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'NumRefTypeLabel' => $r['NumRefType'] ? \App\Libraries\ValueSet::getLabel('numeric_ref_type', $r['NumRefType']) : '',
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'RangeType' => $r['RangeType'],
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'RangeTypeLabel' => $r['RangeType'] ? \App\Libraries\ValueSet::getLabel('range_type', $r['RangeType']) : '',
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'SpcType' => $r['SpcType'],
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'Sex' => $r['Sex'],
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'SexLabel' => $r['Sex'] ? \App\Libraries\ValueSet::getLabel('gender', $r['Sex']) : '',
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'LowSign' => $r['LowSign'],
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'LowSignLabel' => $r['LowSign'] ? \App\Libraries\ValueSet::getLabel('math_sign', $r['LowSign']) : '',
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'HighSign' => $r['HighSign'],
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'HighSignLabel' => $r['HighSign'] ? \App\Libraries\ValueSet::getLabel('math_sign', $r['HighSign']) : '',
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'High' => $r['High'] !== null ? (float) $r['High'] : null,
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'Low' => $r['Low'] !== null ? (float) $r['Low'] : null,
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'AgeStart' => (int) $r['AgeStart'],
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'AgeEnd' => (int) $r['AgeEnd'],
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'Flag' => $r['Flag'],
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'Interpretation' => $r['Interpretation'],
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'Notes' => $r['Notes'],
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];
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}, $rows ?? []);
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}
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/**
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* Disable all numeric reference ranges for a test
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@ -105,23 +107,25 @@ class RefNumModel extends BaseModel
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public function batchInsert($testSiteID, $siteID, $ranges)
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{
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foreach ($ranges as $index => $range) {
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$this->insert([
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'TestSiteID' => $testSiteID,
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'SiteID' => $siteID,
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'NumRefType' => $range['NumRefType'],
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'RangeType' => $range['RangeType'],
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'Sex' => $range['Sex'],
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'AgeStart' => (int) ($range['AgeStart'] ?? 0),
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'AgeEnd' => (int) ($range['AgeEnd'] ?? 150),
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'LowSign' => !empty($range['LowSign']) ? $range['LowSign'] : null,
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'Low' => !empty($range['Low']) ? (float) $range['Low'] : null,
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'HighSign' => !empty($range['HighSign']) ? $range['HighSign'] : null,
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'High' => !empty($range['High']) ? (float) $range['High'] : null,
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'Flag' => $range['Flag'] ?? null,
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'Interpretation'=> $range['Interpretation'] ?? null,
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'Display' => $index,
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'CreateDate' => date('Y-m-d H:i:s'),
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]);
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}
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}
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$this->insert([
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'TestSiteID' => $testSiteID,
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'SiteID' => $siteID,
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'SpcType' => $range['SpcType'] ?? 'GEN',
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'NumRefType' => $range['NumRefType'],
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'RangeType' => $range['RangeType'],
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'Sex' => $range['Sex'],
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'AgeStart' => (int) ($range['AgeStart'] ?? 0),
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'AgeEnd' => (int) ($range['AgeEnd'] ?? 150),
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'LowSign' => !empty($range['LowSign']) ? $range['LowSign'] : null,
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'Low' => !empty($range['Low']) ? (float) $range['Low'] : null,
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'HighSign' => !empty($range['HighSign']) ? $range['HighSign'] : null,
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'High' => !empty($range['High']) ? (float) $range['High'] : null,
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'Flag' => $range['Flag'] ?? null,
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'Interpretation'=> $range['Interpretation'] ?? null,
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'Notes' => $range['Notes'] ?? null,
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'Display' => $index,
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'CreateDate' => date('Y-m-d H:i:s'),
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]);
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}
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}
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}
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@ -5182,12 +5182,49 @@ paths:
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message:
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type: string
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example: 'Invalid member TestSiteID(s): 185, 186. Make sure to use TestSiteID, not SeqScr or other values.'
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/api/test/{id}:
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get:
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tags:
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- Test
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summary: Get test definition by ID
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security:
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- bearerAuth: []
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parameters:
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- name: id
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in: path
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required: true
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schema:
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type: integer
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description: Test Site ID
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responses:
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'200':
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description: Test definition details
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content:
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application/json:
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schema:
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type: object
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properties:
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status:
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type: string
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message:
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type: string
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data:
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$ref: '#/components/schemas/TestDefinition'
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'404':
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description: Test not found
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patch:
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tags:
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- Test
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summary: Update test definition
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security:
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- bearerAuth: []
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parameters:
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- name: id
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in: path
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required: true
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schema:
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type: integer
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description: Test Site ID
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requestBody:
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required: true
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content:
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@ -5335,36 +5372,6 @@ paths:
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message:
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type: string
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example: 'Invalid member TestSiteID(s): 185, 186. Make sure to use TestSiteID, not SeqScr or other values.'
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/api/test/{id}:
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get:
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tags:
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- Test
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summary: Get test definition by ID
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security:
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- bearerAuth: []
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parameters:
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- name: id
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in: path
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required: true
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schema:
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type: integer
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description: Test Site ID
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responses:
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'200':
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description: Test definition details
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content:
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application/json:
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schema:
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type: object
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properties:
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status:
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type: string
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message:
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type: string
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data:
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$ref: '#/components/schemas/TestDefinition'
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'404':
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description: Test not found
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delete:
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tags:
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- Test
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@ -7072,6 +7079,9 @@ components:
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type: string
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RangeTypeLabel:
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type: string
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SpcType:
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type: string
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description: Specimen type code (e.g., GEN, EDTA)
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Sex:
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type: string
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SexLabel:
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@ -7098,6 +7108,9 @@ components:
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type: string
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Interpretation:
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type: string
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Notes:
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type: string
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description: Optional note attached to the numeric reference range
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reftxt:
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type: array
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description: Text reference ranges (optional). Mutually exclusive with refnum - a test can only have ONE reference type.
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@ -223,50 +223,56 @@ TestDefinition:
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description: Test mappings
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items:
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$ref: '#/TestMap'
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refnum:
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type: array
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description: Numeric reference ranges (optional). Mutually exclusive with reftxt - a test can only have ONE reference type.
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items:
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type: object
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properties:
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RefNumID:
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type: integer
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NumRefType:
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type: string
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enum: [NMRC, THOLD]
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description: NMRC=Numeric range, THOLD=Threshold
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NumRefTypeLabel:
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type: string
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RangeType:
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type: string
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RangeTypeLabel:
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type: string
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Sex:
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type: string
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SexLabel:
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type: string
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LowSign:
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type: string
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LowSignLabel:
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type: string
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HighSign:
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type: string
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HighSignLabel:
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type: string
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High:
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type: number
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format: float
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Low:
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type: number
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format: float
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AgeStart:
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type: integer
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AgeEnd:
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type: integer
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Flag:
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type: string
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Interpretation:
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type: string
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refnum:
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type: array
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description: Numeric reference ranges (optional). Mutually exclusive with reftxt - a test can only have ONE reference type.
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items:
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type: object
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properties:
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RefNumID:
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type: integer
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NumRefType:
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type: string
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enum: [NMRC, THOLD]
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description: NMRC=Numeric range, THOLD=Threshold
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NumRefTypeLabel:
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type: string
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RangeType:
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type: string
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RangeTypeLabel:
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type: string
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SpcType:
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type: string
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description: Specimen type code (e.g., GEN, EDTA)
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Sex:
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type: string
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SexLabel:
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type: string
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LowSign:
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type: string
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LowSignLabel:
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type: string
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HighSign:
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type: string
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HighSignLabel:
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type: string
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High:
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type: number
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format: float
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Low:
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type: number
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format: float
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AgeStart:
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type: integer
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AgeEnd:
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type: integer
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Flag:
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type: string
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Interpretation:
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type: string
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Notes:
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type: string
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description: Optional note attached to the numeric reference range
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reftxt:
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type: array
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description: Text reference ranges (optional). Mutually exclusive with refnum - a test can only have ONE reference type.
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@ -698,148 +698,10 @@
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type: string
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example: 'Invalid member TestSiteID(s): 185, 186. Make sure to use TestSiteID, not SeqScr or other values.'
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patch:
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tags: [Test]
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summary: Update test definition
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security:
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- bearerAuth: []
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requestBody:
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required: true
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content:
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application/json:
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schema:
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type: object
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properties:
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TestSiteID:
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type: integer
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description: Test Site ID (required)
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TestSiteCode:
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type: string
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TestSiteName:
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type: string
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TestType:
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type: string
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enum: [TEST, PARAM, CALC, GROUP, TITLE]
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Description:
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type: string
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DisciplineID:
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type: integer
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DepartmentID:
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type: integer
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ResultType:
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type: string
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enum: [NMRIC, RANGE, TEXT, VSET, NORES]
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RefType:
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type: string
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enum: [RANGE, THOLD, VSET, TEXT, NOREF]
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VSet:
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type: integer
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ReqQty:
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type: number
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format: decimal
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ReqQtyUnit:
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type: string
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Unit1:
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type: string
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Factor:
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type: number
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format: decimal
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Unit2:
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type: string
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Decimal:
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type: integer
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CollReq:
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type: string
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Method:
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type: string
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ExpectedTAT:
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type: integer
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SeqScr:
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type: integer
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SeqRpt:
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type: integer
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IndentLeft:
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type: integer
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FontStyle:
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type: string
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isVisibleScr:
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type: integer
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isVisibleRpt:
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type: integer
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isCountStat:
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type: integer
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testdefcal:
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type: object
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description: Calculated test metadata persisted in the `testdefcal` table.
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properties:
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FormulaCode:
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type: string
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description: Formula expression for calculated tests (e.g., "{TBIL} - {DBIL}")
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testdefgrp:
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type: object
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description: Group member payload stored in the `testdefgrp` table.
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properties:
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members:
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type: array
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description: Array of member TestSiteIDs for CALC/GROUP definitions.
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items:
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type: object
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properties:
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TestSiteID:
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type: integer
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description: Foreign key referencing the member test's TestSiteID.
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required:
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- TestSiteID
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refnum:
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type: array
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items:
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type: object
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reftxt:
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type: array
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items:
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type: object
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testmap:
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type: array
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items:
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type: object
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required:
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- TestSiteID
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responses:
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'200':
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description: Test definition updated
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content:
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application/json:
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schema:
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type: object
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properties:
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status:
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type: string
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example: success
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message:
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type: string
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data:
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type: object
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properties:
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TestSiteId:
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type: integer
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'400':
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description: Validation error (e.g., invalid member TestSiteID)
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content:
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application/json:
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schema:
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type: object
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properties:
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status:
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type: string
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example: failed
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message:
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type: string
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example: 'Invalid member TestSiteID(s): 185, 186. Make sure to use TestSiteID, not SeqScr or other values.'
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/api/test/{id}:
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get:
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tags: [Test]
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summary: Get test definition by ID
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/api/test/{id}:
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get:
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tags: [Test]
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summary: Get test definition by ID
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security:
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- bearerAuth: []
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parameters:
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@ -850,23 +712,168 @@
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type: integer
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description: Test Site ID
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responses:
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'200':
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description: Test definition details
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content:
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application/json:
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schema:
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type: object
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properties:
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status:
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type: string
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message:
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type: string
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data:
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$ref: '../components/schemas/tests.yaml#/TestDefinition'
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'404':
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description: Test not found
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delete:
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'200':
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description: Test definition details
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content:
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application/json:
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schema:
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type: object
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properties:
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status:
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type: string
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message:
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type: string
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data:
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$ref: '../components/schemas/tests.yaml#/TestDefinition'
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'404':
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description: Test not found
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patch:
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tags: [Test]
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summary: Update test definition
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security:
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- bearerAuth: []
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parameters:
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- name: id
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in: path
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required: true
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schema:
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type: integer
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description: Test Site ID
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requestBody:
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required: true
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content:
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application/json:
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schema:
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type: object
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properties:
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TestSiteID:
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type: integer
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description: Test Site ID (required)
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TestSiteCode:
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type: string
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TestSiteName:
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type: string
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TestType:
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type: string
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enum: [TEST, PARAM, CALC, GROUP, TITLE]
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Description:
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type: string
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DisciplineID:
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type: integer
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DepartmentID:
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type: integer
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ResultType:
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type: string
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enum: [NMRIC, RANGE, TEXT, VSET, NORES]
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RefType:
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type: string
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enum: [RANGE, THOLD, VSET, TEXT, NOREF]
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VSet:
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type: integer
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ReqQty:
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type: number
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format: decimal
|
||||
ReqQtyUnit:
|
||||
type: string
|
||||
Unit1:
|
||||
type: string
|
||||
Factor:
|
||||
type: number
|
||||
format: decimal
|
||||
Unit2:
|
||||
type: string
|
||||
Decimal:
|
||||
type: integer
|
||||
CollReq:
|
||||
type: string
|
||||
Method:
|
||||
type: string
|
||||
ExpectedTAT:
|
||||
type: integer
|
||||
SeqScr:
|
||||
type: integer
|
||||
SeqRpt:
|
||||
type: integer
|
||||
IndentLeft:
|
||||
type: integer
|
||||
FontStyle:
|
||||
type: string
|
||||
isVisibleScr:
|
||||
type: integer
|
||||
isVisibleRpt:
|
||||
type: integer
|
||||
isCountStat:
|
||||
type: integer
|
||||
testdefcal:
|
||||
type: object
|
||||
description: Calculated test metadata persisted in the `testdefcal` table.
|
||||
properties:
|
||||
FormulaCode:
|
||||
type: string
|
||||
description: Formula expression for calculated tests (e.g., "{TBIL} - {DBIL}")
|
||||
testdefgrp:
|
||||
type: object
|
||||
description: Group member payload stored in the `testdefgrp` table.
|
||||
properties:
|
||||
members:
|
||||
type: array
|
||||
description: Array of member TestSiteIDs for CALC/GROUP definitions.
|
||||
items:
|
||||
type: object
|
||||
properties:
|
||||
TestSiteID:
|
||||
type: integer
|
||||
description: Foreign key referencing the member test's TestSiteID.
|
||||
required:
|
||||
- TestSiteID
|
||||
refnum:
|
||||
type: array
|
||||
items:
|
||||
type: object
|
||||
reftxt:
|
||||
type: array
|
||||
items:
|
||||
type: object
|
||||
testmap:
|
||||
type: array
|
||||
items:
|
||||
type: object
|
||||
required:
|
||||
- TestSiteID
|
||||
responses:
|
||||
'200':
|
||||
description: Test definition updated
|
||||
content:
|
||||
application/json:
|
||||
schema:
|
||||
type: object
|
||||
properties:
|
||||
status:
|
||||
type: string
|
||||
example: success
|
||||
message:
|
||||
type: string
|
||||
data:
|
||||
type: object
|
||||
properties:
|
||||
TestSiteId:
|
||||
type: integer
|
||||
'400':
|
||||
description: Validation error (e.g., invalid member TestSiteID)
|
||||
content:
|
||||
application/json:
|
||||
schema:
|
||||
type: object
|
||||
properties:
|
||||
status:
|
||||
type: string
|
||||
example: failed
|
||||
message:
|
||||
type: string
|
||||
example: 'Invalid member TestSiteID(s): 185, 186. Make sure to use TestSiteID, not SeqScr or other values.'
|
||||
|
||||
delete:
|
||||
tags: [Test]
|
||||
summary: Soft delete test definition
|
||||
security:
|
||||
|
||||
@ -42,6 +42,52 @@ class TestCreateVariantsTest extends CIUnitTestCase
|
||||
}
|
||||
}
|
||||
|
||||
public function testNumericRefRangeNotesPersistAfterCreate(): void
|
||||
{
|
||||
$notes = 'Auto note ' . uniqid();
|
||||
$refnum = $this->buildRefNumEntries('NMRC', false);
|
||||
$refnum[0]['Notes'] = $notes;
|
||||
|
||||
$payload = $this->buildTechnicalPayload('TEST', [
|
||||
'ResultType' => 'NMRIC',
|
||||
'RefType' => 'RANGE',
|
||||
]);
|
||||
$payload['refnum'] = $refnum;
|
||||
|
||||
$response = $this->withBodyFormat('json')->call('post', $this->endpoint, $payload);
|
||||
$response->assertStatus(201);
|
||||
$json = json_decode($response->getJSON(), true);
|
||||
$testSiteId = $json['data']['TestSiteId'];
|
||||
|
||||
$show = $this->call('get', $this->endpoint . '/' . $testSiteId);
|
||||
$show->assertStatus(200);
|
||||
$showJson = json_decode($show->getJSON(), true);
|
||||
$this->assertSame($notes, $showJson['data']['refnum'][0]['Notes']);
|
||||
}
|
||||
|
||||
public function testNumericRefRangeSpcTypePersistAfterCreate(): void
|
||||
{
|
||||
$spcType = 'EDTA';
|
||||
$refnum = $this->buildRefNumEntries('NMRC', false);
|
||||
$refnum[0]['SpcType'] = $spcType;
|
||||
|
||||
$payload = $this->buildTechnicalPayload('TEST', [
|
||||
'ResultType' => 'NMRIC',
|
||||
'RefType' => 'RANGE',
|
||||
]);
|
||||
$payload['refnum'] = $refnum;
|
||||
|
||||
$response = $this->withBodyFormat('json')->call('post', $this->endpoint, $payload);
|
||||
$response->assertStatus(201);
|
||||
$json = json_decode($response->getJSON(), true);
|
||||
$testSiteId = $json['data']['TestSiteId'];
|
||||
|
||||
$show = $this->call('get', $this->endpoint . '/' . $testSiteId);
|
||||
$show->assertStatus(200);
|
||||
$showJson = json_decode($show->getJSON(), true);
|
||||
$this->assertSame($spcType, $showJson['data']['refnum'][0]['SpcType']);
|
||||
}
|
||||
|
||||
public function testCreateTechnicalWithThresholdReference(): void
|
||||
{
|
||||
$refnum = $this->buildRefNumEntries('THOLD', true);
|
||||
@ -321,6 +367,8 @@ class TestCreateVariantsTest extends CIUnitTestCase
|
||||
'AgeEnd' => 120,
|
||||
'Flag' => 'N',
|
||||
'Interpretation' => 'Normal range',
|
||||
'SpcType' => 'GEN',
|
||||
'Notes' => 'Default numeric range note',
|
||||
],
|
||||
];
|
||||
|
||||
@ -337,6 +385,8 @@ class TestCreateVariantsTest extends CIUnitTestCase
|
||||
'AgeEnd' => 99,
|
||||
'Flag' => 'N',
|
||||
'Interpretation' => 'Alternate range',
|
||||
'SpcType' => 'GEN',
|
||||
'Notes' => 'Alternate numeric range note',
|
||||
];
|
||||
}
|
||||
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user